Across TCGA patient cohorts, SNHG28 mutation is significantly associated with the RNA expression of many other genes, with 27 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible SNHG28-associated genes across cancer lineages are USP17L3, YWHAQP7, and IGHV1OR21-1. Each is linked with SNHG28 in more than 1 cancer types. Because this analysis shows association rather than direction, both SNHG28-to-partner and partner-to-SNHG28 results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SNHG28→partner) and Y-score (partner→SNHG28) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	USP17L3 →	+0.024	+8.055	<.001	.007	3	2
UCEC	YWHAQP7 →	+0.183	+3.155	<.001	.004	3	1
UCEC	IGHV1OR21-1 →	+0.796	+3.784	.006	.003	3	1
BRCA	RNA5SP347 →	+0.279	+9.057	<.001	.003	3	1
BRCA	RNA5SP261 →	+0.291	+8.055	<.001	.007	3	1
UCEC	MYRF-AS1 →	+0.160	+3.544	<.001	.007	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 27 associations by consensus.

Exploration

SNHG28 survival (RNA) · tumor vs normal (RNA) · all SNHG28 data types