Across TCGA cell cohorts, SND1 mutation is significantly associated with the RNA expression of many other genes, with 756 significant associations in total. LARGE_INTESTINE shows the largest number of these associations.

The most reproducible SND1-associated genes across cancer lineages are LCN1, LMX1A, and USP17L18. Each is linked with SND1 in more than 1 cancer types. Because this analysis shows association rather than direction, both SND1-to-partner and partner-to-SND1 results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SND1→partner) and Y-score (partner→SND1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BREAST	LCN1 →	+0.041	+3.672	<.001	.006	3	1
BREAST	LMX1A →	+0.019	+4.285	<.001	.005	3	1
BREAST	USP17L18 →	+0.019	+4.312	<.001	.001	3	1
BREAST	OPN1MW3 →	+0.009	+3.672	<.001	.006	3	1
BREAST	CSNKA2IP →	+0.005	+3.672	<.001	.006	3	1
LARGE_INTESTINE	GCAT →	+1.145	+2.502	.002	.005	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 756 associations by consensus.

Exploration

SND1 survival (RNA) · tumor vs normal (RNA) · all SND1 data types