SNAPC4

Across TCGA cell cohorts, SNAPC4 RNA expression is significantly associated with the go_rna of many other GO terms, with 4,550 significant associations in total. BLOOD_Lymphoma shows the largest number of these associations.

The most reproducible SNAPC4-associated GO terms across cancer lineages are Transcription by RNA polymerase III, Nucleic acid transport, and RNA transport. Each is linked with SNAPC4 in more than 18 cancer types. Because this analysis shows association rather than direction, both SNAPC4-to-partner and partner-to-SNAPC4 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Transcription by RNA polymerase III grouped by SNAPC4-low versus SNAPC4-high in BONE.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (SNAPC4→partner) and Y-score (partner→SNAPC4) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BONE	Transcription by RNA polymerase III →	+0.103	+1.050	.001	.001	3	19
OESOPHAGUS	Nucleic acid transport →	+0.133	+1.079	.003	.003	3	18
OESOPHAGUS	RNA transport →	+0.133	+1.079	.003	.003	3	18
OESOPHAGUS	RNA export from nucleus →	+0.152	+1.126	.001	.002	3	18
BONE	Regulation of transcription of nucleolar large rRNA by RNA polymerase I →	+0.138	+0.753	<.001	<.001	3	17
STOMACH	Regulation of mRNA splicing, via spliceosome →	+0.082	+0.849	.002	<.001	3	17

Each partner links to its Q-omics profile. Showing the 6 strongest of 4,550 associations by consensus.

Transcription by RNA polymerase III by SNAPC4 expression — BONE

Explore this box plot interactively →