SLC49A4

mutation — cross-omics
Cross-omicsMUTATION → PROTEIN-RPPAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, SLC49A4 mutation is significantly associated with the total protein of many other genes, with 5 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible SLC49A4-associated genes across cancer lineages are EGFR, Ku80, and TIGAR. Each is linked with SLC49A4 in more than 1 cancer types. Because this analysis shows association rather than direction, both SLC49A4-to-partner and partner-to-SLC49A4 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, EGFR grouped by SLC49A4-low versus SLC49A4-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SLC49A4→partner) and Y-score (partner→SLC49A4) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECEGFR →-0.192-3.321.022.01031
UCECKu80 →+0.257+2.183.038.03531
UCECTIGAR →+0.175+2.196.029.03431
UCECCaspase-8 →-0.296-3.169.024.01931
UCECCyclin-B1 →+0.663+3.321.024.01031
Each partner links to its Q-omics profile. Showing the 5 strongest of 5 associations by consensus.

EGFR by SLC49A4 expression — UCEC

Box plot of EGFR in SLC49A4-low vs SLC49A4-high samples in UCEC.

Explore this box plot interactively →

Exploration