SHANK2-AS2

Across TCGA patient cohorts, SHANK2-AS2 RNA expression is significantly associated with the RNA expression of many other genes, with 10,103 significant associations in total. SARC shows the largest number of these associations.

The most reproducible SHANK2-AS2-associated genes across cancer lineages are SHANK2-AS1, SHANK2, and RNF213-AS1. Each is linked with SHANK2-AS2 in more than 26 cancer types. Because this analysis shows association rather than direction, both SHANK2-AS2-to-partner and partner-to-SHANK2-AS2 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, SHANK2-AS2 versus SHANK2-AS1 in ESCA, with a Pearson correlation of 0.89.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (SHANK2-AS2→partner) and Y-score (partner→SHANK2-AS2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
ESCA	SHANK2-AS1 →	+0.554	+0.903	<.001	<.001	3	27
SARC	SHANK2 →	+2.832	+0.063	<.001	<.001	3	26
THYM	RNF213-AS1 →	+0.526	+0.283	<.001	<.001	3	18
SARC	CROCCP3 →	+0.847	+0.042	<.001	.003	3	18
LUAD	RN7SL381P →	+0.773	+0.230	<.001	<.001	3	17
SARC	PARGP1 →	+0.818	+0.029	<.001	.004	3	17

Each partner links to its Q-omics profile. Showing the 6 strongest of 10,103 associations by consensus.

SHANK2-AS2 vs SHANK2-AS1 — ESCA

Explore this scatter interactively →