SCML2P1

Across TCGA patient cohorts, SCML2P1 RNA expression is significantly associated with the go_rna of many other GO terms, with 5,611 significant associations in total. LUSC shows the largest number of these associations.

The most reproducible SCML2P1-associated GO terms across cancer lineages are Regulation of organelle assembly, Recombinational repair, and Cell cycle checkpoint signaling. Each is linked with SCML2P1 in more than 14 cancer types. Because this analysis shows association rather than direction, both SCML2P1-to-partner and partner-to-SCML2P1 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Regulation of organelle assembly grouped by SCML2P1-low versus SCML2P1-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (SCML2P1→partner) and Y-score (partner→SCML2P1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Regulation of organelle assembly →	+0.055	+0.103	<.001	<.001	3	14
STAD	Recombinational repair →	+0.036	+0.068	<.001	<.001	3	14
ESCA	Cell cycle checkpoint signaling →	+0.053	+0.179	.002	.002	2	15
STAD	tRNA processing →	+0.056	+0.128	<.001	<.001	3	14
STAD	Regulation of double-strand break repair via homologous recombination →	+0.038	+0.067	<.001	<.001	3	14
STAD	Spindle assembly →	+0.065	+0.126	<.001	<.001	3	14

Each partner links to its Q-omics profile. Showing the 6 strongest of 5,611 associations by consensus.

Regulation of organelle assembly by SCML2P1 expression — STAD

Explore this box plot interactively →