SCML2P1

associated omics data
SCML2 pseudogene 1Genealiases: []

Q-omics provides the consensus-scored SCML2P1 profile across patient tissues and cancer cell-line models. SCML2P1 expression is associated with patient survival in 15 of 34 cancer types, with the highest sampling consensus in KICH. Among the 18 cancer types available for tumor–normal comparison, SCML2P1 is differentially expressed in 5, with the highest sampling consensus in HNSC. Additionally, SCML2P1 RNA expression shows 6,967 significant gene co-expression associations, with the highest sampling consensus in TGCT. Together, these results highlight KICH, HNSC, and TGCT as cancer lineages where SCML2P1 shows reproducible signals across survival, tumor–normal expression, and patient cross-omics analyses.

Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns.

Survival associations

This table summarizes SCML2P1 survival associations across molecular data types. SCML2P1 RNA expression shows survival associations in the most cancer types (15). The rightmost column indicates the cancer type with the highest sampling consensus for each molecular layer.
SCML2P1 data typeSurvival analysisLineage consensusLineage of highest sampling consensus
RNAKaplan–Meier15KICH (81)view →
This table ranks reproducible SCML2P1 RNA expression–survival associations across cancer types. High SCML2P1 expression shows unfavorable associations in KICH, BRCA, GBM and LIHC, but favorable associations in HNSC and ESCA. The KICH Kaplan–Meier curve shows clear separation, with the high-expression group declining faster, consistent with the unfavorable association (log-rank p < 0.001). Together, the overview and detailed table identify KICH as the clearest survival context for SCML2P1 RNA expression.
LineageMeasureSplitStageAUC1
high
AUC2
low
pSampling consensus
KICHDFSTertileAll0.3110.913<.00181view →
BRCAOSTertileAll0.4810.588<.00142view →
HNSCDFSTertileIII,IV0.7110.558.02542view →
GBMOSTertileAll0.0500.420<.00136view →
LIHCOSTertileIII,IV0.1880.654.00227view →
ESCADFSMedianIV0.6340.205.00624view →
Pink = unfavorable, green = favorable. all 15 lineages →

SCML2P1-KICH (DFS)

Kaplan–Meier survival curve for SCML2P1 RNA expression in KICH: high vs low expression groups.

Explore this curve interactively →

Tumor vs Normal expression

This table summarizes SCML2P1 tumor–normal expression differences by data type. RNA shows broader differences across cancer types, with a lineage consensus of 5. The strongest signals are observed in HNSC for RNA.
SCML2P1 data typeExpression analysisLineage consensusLineage of highest sampling consensus
RNABox plot5HNSC (5)view →
This table ranks reproducible tumor–normal expression differences for SCML2P1. A negative fold-change indicates higher expression in normal tissue than in tumor tissue. SCML2P1 shows higher tumor expression in HNSC, LUSC, BRCA, PRAD and STAD. The HNSC box plot shows higher SCML2P1 RNA expression in tumor versus normal tissue (log2 FC = +0.024, t-test p = .004).
LineageGenderStageFold-changepSampling consensus
HNSCAllII,III,IV+0.024.0045view →
LUSCMaleAll+0.149<.0014view →
BRCAAllAll+0.028.0224view →
PRADAllAll+0.182.0082view →
STADMaleAll+0.081.0401view →
Green = repressed in tumor. all 5 lineages →

SCML2P1-HNSC

Tumor-vs-normal expression box plot for SCML2P1 in HNSC.

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Cross-omics associations

This table shows molecular features associated with SCML2P1 in patient tissues and cancer cell lines. In patient samples, SCML2P1 shows the broadest associations at the RNA and protein expression levels, with TGCT recurring as the lineage with the largest associated feature set.
Associated data typeStrength (# associated data)Lineage of highest associated data
RNA
RNA6,967TGCT (2328)view →
Function (RNA)5,611LUSC (3120)view →