SCARNA23

Across TCGA patient cohorts, SCARNA23 RNA expression is significantly associated with the protein abundance of many other proteins, with 8,808 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible SCARNA23-associated proteins across cancer lineages are MSH2, NASP, and NIPBL. Each is linked with SCARNA23 in more than 4 cancer types. Because this analysis shows association rather than direction, both SCARNA23-to-partner and partner-to-SCARNA23 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, SCARNA23 versus MSH2 in LSCC, with a Pearson correlation of 0.39.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (SCARNA23→partner) and Y-score (partner→SCARNA23) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	MSH2 →	+0.549	+1.008	.001	.004	3	5
GBM	NASP →	+0.501	+0.893	.001	.002	3	4
GBM	NIPBL →	+0.271	+1.149	<.001	<.001	3	4
LSCC	PDS5A →	+0.283	+0.992	<.001	.001	3	4
GBM	PPIL4 →	+0.282	+1.171	.001	<.001	3	4
GBM	RBM39 →	+0.298	+1.015	<.001	.006	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 8,808 associations by consensus.

SCARNA23 vs MSH2 — LSCC

Explore this scatter interactively →