RGMB-AS1

RNA — tumor vs normal
Tumor vs NormalRNABox plot · TCGA cohorts

Across TCGA pan-cancer cohorts, RGMB-AS1 RNA differs between tumor and matched normal tissue in 7 of 18 cancer types tested, making tumor–normal expression one of RGMB-AS1’s most consistent transcriptional readouts.

The strongest signal is observed in stomach adenocarcinoma (STAD), where RGMB-AS1 RNA is repressed in tumor relative to normal tissue. In most cancer types RGMB-AS1 is over-expressed in tumor, although a few such as STAD and KIRC show the opposite, repressed pattern.

STAD, KIRC, and PRAD are the cancer types where RGMB-AS1 tumor–normal differential expression is most reproducible.

RNA tumor vs normal associations by lineage

Ranked by sampling consensus. Fold-change is the tumor-versus-normal difference in RGMB-AS1 RNA (log2); positive values indicate higher expression in tumor. p-values are from the differential-expression test.
LineageGenderStageFold-changepSampling consensus
STADAllAll−0.480.0046view →
KIRCMaleAll−0.223<.0015view →
PRADAllAll+0.818<.0012view →
LUADMaleIII,IV−0.413.0042view →
LUSCAllIII,IV−0.380.0092view →
ESCAAllAll−1.170.0211view →
BLCAFemaleIII,IV+0.488.0281view →
Pink = over-expressed in tumor, green = repressed in tumor. Showing the 7 strongest of 7 lineages.

RGMB-AS1–STAD

Tumor-vs-normal expression box plot for RGMB-AS1 RNA in STAD.

Open the STAD breakdown →

Exploration