RBKS

mutation — cross-omics
Cross-omicsMUTATION → RNACell-linePairwise association · TCGA cohorts

Across TCGA cell cohorts, RBKS mutation is significantly associated with the RNA expression of many other genes, with 15 significant associations in total. BLOOD_Leukemia shows the largest number of these associations.

The most reproducible RBKS-associated genes across cancer lineages are KRTAP5-11, MYL10, and SCGB3A2. Each is linked with RBKS in more than 1 cancer types. Because this analysis shows association rather than direction, both RBKS-to-partner and partner-to-RBKS results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, KRTAP5-11 grouped by RBKS-low versus RBKS-high in SKIN.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (RBKS→partner) and Y-score (partner→RBKS) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
SKINKRTAP5-11 →+0.028+3.684<.001.00631
BLOOD_LeukemiaMYL10 →+0.018+4.569<.001.00331
BLOOD_LeukemiaSCGB3A2 →+0.128+3.922<.001.00231
BLOOD_LeukemiaTLX3 →+2.721+4.266<.001.00131
BLOOD_LeukemiaOR7G3 →+0.023+3.969<.001.00931
BLOOD_LeukemiaOTOS →+0.025+3.969<.001.00931
Each partner links to its Q-omics profile. Showing the 6 strongest of 15 associations by consensus.

KRTAP5-11 by RBKS expression — SKIN

Box plot of KRTAP5-11 in RBKS-low vs RBKS-high samples in SKIN.

Explore this box plot interactively →

Exploration