RAB4B

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNACell-linePairwise association · TCGA cohorts

Across TCGA cell cohorts, RAB4B protein abundance is significantly associated with the RNA expression of many other genes, with 478 significant associations in total. PANCREAS shows the largest number of these associations.

The most reproducible RAB4B-associated genes across cancer lineages are NELFA, C14orf39, and DNAJB9. Each is linked with RAB4B in more than 2 cancer types. Because this analysis shows association rather than direction, both RAB4B-to-partner and partner-to-RAB4B results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, RAB4B versus NELFA in BREAST, with a Pearson correlation of -0.69.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (RAB4B→partner) and Y-score (partner→RAB4B) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BREASTNELFA →-0.982-1.184.003.00633
CNSC14orf39 →-0.283-2.303.009.00632
PANCREASDNAJB9 →+2.636+0.954.008.00523
PANCREASCCPG1 →+3.303+0.954.003.00523
BLOOD_LymphomaFOXP4 →-0.783-1.819.006.00532
LUNG_SCLCRBL1 →-0.472-0.659<.001.00532
Each partner links to its Q-omics profile. Showing the 6 strongest of 478 associations by consensus.

RAB4B vs NELFA — BREAST

Per-sample scatter of RAB4B vs NELFA in BREAST (Pearson r = -0.69).

Explore this scatter interactively →

Exploration