Across TCGA patient cohorts, PTPRT-AS1 RNA expression is significantly associated with the protein abundance of many other proteins, with 8,884 significant associations in total. GBM shows the largest number of these associations.

The most reproducible PTPRT-AS1-associated proteins across cancer lineages are NEO1, CASP4, and DDAH1. Each is linked with PTPRT-AS1 in more than 2 cancer types. Because this analysis shows association rather than direction, both PTPRT-AS1-to-partner and partner-to-PTPRT-AS1 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (PTPRT-AS1→partner) and Y-score (partner→PTPRT-AS1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	NEO1 →	+0.367	+0.705	.009	.001	3	3
GBM	CASP4 →	-0.769	-0.757	<.001	<.001	3	3
GBM	DDAH1 →	+0.476	+0.736	<.001	<.001	3	3
GBM	DOK2 →	-0.697	-0.760	<.001	<.001	3	3
LSCC	GSTA4 →	+1.268	+1.095	<.001	<.001	3	3
BRCA	HDGFL3 →	+0.542	+0.043	.006	.002	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 8,884 associations by consensus.

Exploration

PTPRT-AS1 survival (RNA) · tumor vs normal (RNA) · all PTPRT-AS1 data types