PPP1R3D

mutation — cross-omics
Cross-omicsMUTATION → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, PPP1R3D mutation is significantly associated with the RNA expression of many other genes, with 3,197 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible PPP1R3D-associated genes across cancer lineages are DEFB113, E2F6P1, and RDM1. Each is linked with PPP1R3D in more than 1 cancer types. Because this analysis shows association rather than direction, both PPP1R3D-to-partner and partner-to-PPP1R3D results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, DEFB113 grouped by PPP1R3D-low versus PPP1R3D-high in LUSC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (PPP1R3D→partner) and Y-score (partner→PPP1R3D) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LUSCDEFB113 →+0.336+7.924<.001.00832
UCECE2F6P1 →+0.017+3.186<.001.00332
UCECRDM1 →+0.452+2.201.002<.00131
UCECIGLV2-8 →+1.508+2.201<.001<.00131
UCECMYO19 →+0.490+2.201<.001<.00131
UCECMIR6803 →+0.097+3.777<.001.00731
Each partner links to its Q-omics profile. Showing the 6 strongest of 3,197 associations by consensus.

DEFB113 by PPP1R3D expression — LUSC

Box plot of DEFB113 in PPP1R3D-low vs PPP1R3D-high samples in LUSC.

Explore this box plot interactively →

Exploration