PDCD7

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, PDCD7 protein abundance is significantly associated with the RNA expression of many other genes, with 5,270 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible PDCD7-associated genes across cancer lineages are CSNK2A1, COMMD2, and NAPB. Each is linked with PDCD7 in more than 2 cancer types. Because this analysis shows association rather than direction, both PDCD7-to-partner and partner-to-PDCD7 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, PDCD7 versus CSNK2A1 in LSCC, with a Pearson correlation of 0.38.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (PDCD7→partner) and Y-score (partner→PDCD7) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCCSNK2A1 →+0.474+0.264.002.00332
LSCCCOMMD2 →+0.627+0.316<.001<.00132
LSCCNAPB →+0.418+0.240.006.00632
LSCCATG10 →+0.409+0.312.001<.00132
LSCCHDGFL3 →+0.557+0.352<.001<.00132
LSCCC12orf76 →+0.304+0.205.002.00632
Each partner links to its Q-omics profile. Showing the 6 strongest of 5,270 associations by consensus.

PDCD7 vs CSNK2A1 — LSCC

Per-sample scatter of PDCD7 vs CSNK2A1 in LSCC (Pearson r = 0.38).

Explore this scatter interactively →

Exploration