PCCB

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, PCCB protein abundance is significantly associated with the RNA expression of many other genes, with 14,493 significant associations in total. COAD shows the largest number of these associations.

The most reproducible PCCB-associated genes across cancer lineages are PCCA, RRM2, and ALDH6A1. Each is linked with PCCB in more than 6 cancer types. Because this analysis shows association rather than direction, both PCCB-to-partner and partner-to-PCCB results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, PCCB versus PCCA in OV, with a Pearson correlation of 0.52.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (PCCB→partner) and Y-score (partner→PCCB) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVPCCA →+0.903+0.669<.001<.00137
LUADRRM2 →-1.130-0.359<.001.00137
CCRCCALDH6A1 →+0.850+0.334.003.00636
OVCLYBL →+0.616+0.495<.001<.00136
GBMDLGAP5 →-0.843-0.201<.001.00336
BRCAACSS1 →+0.772+0.433.001<.00136
Each partner links to its Q-omics profile. Showing the 6 strongest of 14,493 associations by consensus.

PCCB vs PCCA — OV

Per-sample scatter of PCCB vs PCCA in OV (Pearson r = 0.52).

Explore this scatter interactively →

Exploration