OCM

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, OCM protein abundance is significantly associated with the RNA expression of many other genes, with 56 significant associations in total. GBM shows the largest number of these associations.

The most reproducible OCM-associated genes across cancer lineages are MCM4, ARMC6, and MRPS7. Each is linked with OCM in more than 1 cancer types. Because this analysis shows association rather than direction, both OCM-to-partner and partner-to-OCM results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, OCM versus MCM4 in GBM, with a Pearson correlation of -0.78.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (OCM→partner) and Y-score (partner→OCM) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMMCM4 →-1.384-0.770.001.00331
GBMARMC6 →-0.860-1.006.001.00531
GBMMRPS7 →-0.564-0.770.001.00331
GBMAUNIP →-0.923-1.006.001.00531
GBMAANAT →+1.096+1.006.004.00531
GBMZMYND15 →+1.186+1.006<.001.00531
Each partner links to its Q-omics profile. Showing the 6 strongest of 56 associations by consensus.

OCM vs MCM4 — GBM

Per-sample scatter of OCM vs MCM4 in GBM (Pearson r = -0.78).

Explore this scatter interactively →

Exploration