NIPSNAP3B

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, NIPSNAP3B protein abundance is significantly associated with the RNA expression of many other genes, with 3,297 significant associations in total. GBM shows the largest number of these associations.

The most reproducible NIPSNAP3B-associated genes across cancer lineages are RN7SL538P, HHATL, and SHD. Each is linked with NIPSNAP3B in more than 1 cancer types. Because this analysis shows association rather than direction, both NIPSNAP3B-to-partner and partner-to-NIPSNAP3B results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, NIPSNAP3B versus RN7SL538P in GBM, with a Pearson correlation of 0.47.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (NIPSNAP3B→partner) and Y-score (partner→NIPSNAP3B) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMRN7SL538P →+0.832+0.606<.001<.00132
HNSCHHATL →+1.396+0.873<.001<.00132
GBMSHD →+1.481+0.515.005.00632
CCRCCCXCL12 →+2.119+0.489.002.00232
HNSCMYH3 →+1.519+0.652<.001<.00132
HNSCZBTB47 →+0.539+0.533.006.00132
Each partner links to its Q-omics profile. Showing the 6 strongest of 3,297 associations by consensus.

NIPSNAP3B vs RN7SL538P — GBM

Per-sample scatter of NIPSNAP3B vs RN7SL538P in GBM (Pearson r = 0.47).

Explore this scatter interactively →

Exploration