Across TCGA pan-cancer cohorts, NIPA1 mass-spec protein differs between tumor and matched normal tissue in 1 of 18 cancer types tested, making tumor–normal expression one of NIPA1’s most consistent transcriptional readouts.
The strongest signal is observed in lung squamous cell carcinoma (LSCC), where NIPA1 mass-spec protein is repressed in tumor relative to normal tissue. In most cancer types NIPA1 is over-expressed in tumor, although a few such as LSCC show the opposite, repressed pattern.
LSCC are the cancer types where NIPA1 tumor–normal differential expression is most reproducible.