MIR3939

Across TCGA patient cohorts, MIR3939 RNA expression is significantly associated with the protein abundance of many other proteins, with 9,869 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible MIR3939-associated proteins across cancer lineages are PRPF3, NUP153, and TOP2A_S1106. Each is linked with MIR3939 in more than 4 cancer types. Because this analysis shows association rather than direction, both MIR3939-to-partner and partner-to-MIR3939 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, MIR3939 versus PRPF3 in LSCC, with a Pearson correlation of 0.39.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (MIR3939→partner) and Y-score (partner→MIR3939) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	PRPF3 →	+0.318	+0.682	<.001	.009	3	5
LSCC	NUP153 →	+0.230	+0.785	<.001	.001	3	5
GBM	TOP2A_S1106 →	+0.609	+0.876	.002	.006	3	4
LUAD	TOP2A_S1377 →	+0.784	+0.892	.002	.002	3	4
GBM	POLE3 →	+0.442	+1.091	.002	<.001	3	4
LSCC	PRPF4 →	+0.299	+1.123	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 9,869 associations by consensus.

MIR3939 vs PRPF3 — LSCC

Explore this scatter interactively →