LSM1P1

associated omics data
LSM1 pseudogene 1Genealiases: []

Q-omics provides the consensus-scored LSM1P1 profile across patient tissues and cancer cell-line models. LSM1P1 expression is associated with patient survival in 14 of 34 cancer types, with the highest sampling consensus in THCA. Among the 18 cancer types available for tumor–normal comparison, LSM1P1 is differentially expressed in 2, with the highest sampling consensus in KIRC. Additionally, LSM1P1 RNA expression shows 12,555 significant protein co-abundance associations, with the highest sampling consensus in GBM. Together, these results highlight THCA, KIRC, and GBM as cancer lineages where LSM1P1 shows reproducible signals across survival, tumor–normal expression, and patient cross-omics analyses.

Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns.

Survival associations

This table summarizes LSM1P1 survival associations across molecular data types. LSM1P1 RNA expression shows survival associations in the most cancer types (14). The rightmost column indicates the cancer type with the highest sampling consensus for each molecular layer.
LSM1P1 data typeSurvival analysisLineage consensusLineage of highest sampling consensus
RNAKaplan–Meier14THCA (129)view →
This table ranks reproducible LSM1P1 RNA expression–survival associations across cancer types. High LSM1P1 expression shows unfavorable associations in THCA, ACC, KIRP, UVM and KIRC, but favorable associations in UCS. The THCA Kaplan–Meier curve shows clear separation, with the high-expression group declining faster, consistent with the unfavorable association (log-rank p < 0.001). Together, the overview and detailed table identify THCA as the clearest survival context for LSM1P1 RNA expression.
LineageMeasureSplitStageAUC1
high
AUC2
low
pSampling consensus
THCADFSTertileAll0.5020.834<.001129view →
ACCDFSTertileAll0.0100.624<.001108view →
KIRPOSTertileII,III,IV0.1110.769<.00154view →
UVMOSTertileAll0.2200.917<.00127view →
UCSOSMedianIV0.7200.233.01124view →
KIRCOSTertileAll0.7390.825.00724view →
Pink = unfavorable, green = favorable. all 14 lineages →

LSM1P1-THCA (DFS)

Kaplan–Meier survival curve for LSM1P1 RNA expression in THCA: high vs low expression groups.

Explore this curve interactively →

Tumor vs Normal expression

This table summarizes LSM1P1 tumor–normal expression differences by data type. RNA shows broader differences across cancer types, with a lineage consensus of 2. The strongest signals are observed in KIRC for RNA.
LSM1P1 data typeExpression analysisLineage consensusLineage of highest sampling consensus
RNABox plot2KIRC (6)view →
This table ranks reproducible tumor–normal expression differences for LSM1P1. A negative fold-change indicates higher expression in normal tissue than in tumor tissue. LSM1P1 shows lower tumor expression in BRCA and higher tumor expression in KIRC. The KIRC box plot shows higher LSM1P1 RNA expression in tumor versus normal tissue (log2 FC = +0.043, t-test p = .013).
LineageGenderStageFold-changepSampling consensus
KIRCAllIII,IV+0.043.0136view →
BRCAAllIII,IV−0.053.0462view →
Green = repressed in tumor. all 2 lineages →

LSM1P1-KIRC

Tumor-vs-normal expression box plot for LSM1P1 in KIRC.

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Cross-omics associations

This table shows molecular features associated with LSM1P1 in patient tissues and cancer cell lines. In patient samples, LSM1P1 shows the broadest associations at the RNA and protein expression levels, with GBM recurring as the lineage with the largest associated feature set.
Associated data typeStrength (# associated data)Lineage of highest associated data
RNA
Protein (mass-spec)12,555GBM (5600)view →
RNA9,041BRCA (2661)view →