Across TCGA cell cohorts, LSAMP RNA expression is significantly associated with the go_rna of many other GO terms, with 1,806 significant associations in total. SKIN shows the largest number of these associations.

The most reproducible LSAMP-associated GO terms across cancer lineages are Homeostasis of number of cells within a tissue, Cytosolic transport, and Peptidyl-lysine modification. Each is linked with LSAMP in more than 4 cancer types. Because this analysis shows association rather than direction, both LSAMP-to-partner and partner-to-LSAMP results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LSAMP→partner) and Y-score (partner→LSAMP) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUNG_NSCLC_LUAD	Homeostasis of number of cells within a tissue →	+0.097	+0.245	.002	.009	3	5
SKIN	Cytosolic transport →	+0.045	+1.289	.006	.009	3	5
LUNG_SCLC	Peptidyl-lysine modification →	+0.045	+1.685	.006	.004	3	5
LARGE_INTESTINE	Olfactory bulb interneuron development →	+1.050	+0.633	<.001	.008	3	4
CNS	Primary amino compound catabolic process →	-0.166	-1.099	.001	.005	3	4
SKIN	Purine nucleoside triphosphate biosynthetic process →	+0.070	+1.525	.003	.007	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 1,806 associations by consensus.

Exploration

LSAMP survival (RNA) · tumor vs normal (RNA) · all LSAMP data types