LINC02538

Across TCGA patient cohorts, LINC02538 RNA expression is significantly associated with the protein abundance of many other proteins, with 8,694 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LINC02538-associated proteins across cancer lineages are ARHGEF12, AFDN, and MYO1F. Each is linked with LINC02538 in more than 3 cancer types. Because this analysis shows association rather than direction, both LINC02538-to-partner and partner-to-LINC02538 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC02538 versus ARHGEF12 in CCRCC, with a Pearson correlation of 0.37.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02538→partner) and Y-score (partner→LINC02538) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
CCRCC	ARHGEF12 →	+0.289	+0.383	<.001	<.001	3	4
GBM	AFDN →	+0.355	+0.443	<.001	<.001	3	4
GBM	MYO1F →	-0.562	-0.437	<.001	<.001	3	3
GBM	MYO1G →	-0.514	-0.321	<.001	.002	3	3
GBM	NES →	+0.478	+0.341	<.001	.001	3	3
CCRCC	P4HA2 →	-0.764	-0.389	<.001	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 8,694 associations by consensus.

LINC02538 vs ARHGEF12 — CCRCC

Explore this scatter interactively →