LINC02499

Across TCGA patient cohorts, LINC02499 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,750 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC02499-associated GO terms across cancer lineages are Coenzyme A metabolic process, Endoplasmic reticulum tubular network organization, and Cellular ketone metabolic process. Each is linked with LINC02499 in more than 10 cancer types. Because this analysis shows association rather than direction, both LINC02499-to-partner and partner-to-LINC02499 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Coenzyme A metabolic process grouped by LINC02499-low versus LINC02499-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02499→partner) and Y-score (partner→LINC02499) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Coenzyme A metabolic process →	+0.067	+0.168	<.001	<.001	3	11
STAD	Endoplasmic reticulum tubular network organization →	+0.085	+0.119	<.001	<.001	3	10
STAD	Cellular ketone metabolic process →	+0.053	+0.181	<.001	<.001	3	10
STAD	Cell redox homeostasis →	+0.065	+0.093	<.001	<.001	3	10
STAD	Positive regulation of proteasomal protein catabolic process →	+0.081	+0.149	<.001	<.001	3	10
STAD	Regulation of proteolysis involved in protein catabolic process →	+0.083	+0.127	<.001	<.001	3	10

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,750 associations by consensus.

Coenzyme A metabolic process by LINC02499 expression — STAD

Explore this box plot interactively →