LINC02403

Across TCGA patient cohorts, LINC02403 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,023 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC02403-associated GO terms across cancer lineages are Nucleoside phosphate biosynthetic process, U2-type prespliceosome assembly, and PERK-mediated unfolded protein response. Each is linked with LINC02403 in more than 8 cancer types. Because this analysis shows association rather than direction, both LINC02403-to-partner and partner-to-LINC02403 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Nucleoside phosphate biosynthetic process grouped by LINC02403-low versus LINC02403-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02403→partner) and Y-score (partner→LINC02403) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Nucleoside phosphate biosynthetic process →	+0.082	+0.059	<.001	<.001	3	9
STAD	U2-type prespliceosome assembly →	+0.106	+0.065	<.001	<.001	3	9
STAD	PERK-mediated unfolded protein response →	+0.093	+0.061	<.001	<.001	3	9
STAD	DNA damage response, signal transduction by p53 class mediator →	+0.081	+0.053	<.001	<.001	3	8
STAD	DNA integrity checkpoint signaling →	+0.079	+0.058	<.001	<.001	3	8
STAD	Regulation of proteasomal ubiquitin-dependent protein catabolic process →	+0.089	+0.066	<.001	<.001	3	8

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,023 associations by consensus.

Nucleoside phosphate biosynthetic process by LINC02403 expression — STAD

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