LINC02004

Across TCGA patient cohorts, LINC02004 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,901 significant associations in total. BRCA shows the largest number of these associations.

The most reproducible LINC02004-associated GO terms across cancer lineages are Spliceosomal conformational changes to generate catalytic conformation, ATP biosynthetic process, and Asparagine metabolic process. Each is linked with LINC02004 in more than 11 cancer types. Because this analysis shows association rather than direction, both LINC02004-to-partner and partner-to-LINC02004 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Spliceosomal conformational changes to generate catalytic conformation grouped by LINC02004-low versus LINC02004-high in ESCA.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC02004→partner) and Y-score (partner→LINC02004) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
ESCA	Spliceosomal conformational changes to generate catalytic conformation →	+0.036	+0.541	.001	<.001	2	12
KIRP	ATP biosynthetic process →	+0.024	+0.423	<.001	<.001	3	11
KIRP	Asparagine metabolic process →	+0.048	+0.374	<.001	<.001	3	10
ESCA	mRNA 3'-splice site recognition →	+0.049	+0.489	.008	.006	1	12
LUSC	Oxidative phosphorylation →	+0.025	+0.457	.001	<.001	2	11
MESO	Proton motive force-driven ATP synthesis →	+0.024	+0.742	<.001	.001	1	11

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,901 associations by consensus.

Spliceosomal conformational changes to generate catalytic conformation by LINC02004 expression — ESCA

Explore this box plot interactively →