LINC01999

Across TCGA patient cohorts, LINC01999 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,559 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01999-associated GO terms across cancer lineages are Regulation of post-translational protein modification, Positive regulation of double-strand break repair, and Peptidyl-lysine modification. Each is linked with LINC01999 in more than 16 cancer types. Because this analysis shows association rather than direction, both LINC01999-to-partner and partner-to-LINC01999 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Regulation of post-translational protein modification grouped by LINC01999-low versus LINC01999-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01999→partner) and Y-score (partner→LINC01999) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Regulation of post-translational protein modification →	+0.066	+0.233	<.001	<.001	3	17
STAD	Positive regulation of double-strand break repair →	+0.055	+0.238	<.001	<.001	3	17
STAD	Peptidyl-lysine modification →	+0.063	+0.278	<.001	<.001	3	16
ESCA	Obsolete histone modification →	+0.068	+0.249	<.001	<.001	3	16
STAD	Viral genome replication →	+0.067	+0.235	<.001	<.001	3	16
ESCA	Regulation of protein ubiquitination →	+0.066	+0.182	<.001	<.001	3	16

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,559 associations by consensus.

Regulation of post-translational protein modification by LINC01999 expression — STAD

Explore this box plot interactively →