LINC01998

Across TCGA patient cohorts, LINC01998 RNA expression is significantly associated with the go_rna of many other GO terms, with 7,064 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01998-associated GO terms across cancer lineages are GTP metabolic process, Regulation of neuron differentiation, and Regulation of oxidoreductase activity. Each is linked with LINC01998 in more than 11 cancer types. Because this analysis shows association rather than direction, both LINC01998-to-partner and partner-to-LINC01998 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, GTP metabolic process grouped by LINC01998-low versus LINC01998-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01998→partner) and Y-score (partner→LINC01998) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	GTP metabolic process →	+0.040	+0.044	<.001	<.001	3	12
ESCA	Regulation of neuron differentiation →	+0.036	+0.147	<.001	<.001	3	11
ESCA	Regulation of oxidoreductase activity →	+0.026	+0.146	.001	.001	3	11
STAD	Organ growth →	+0.038	+0.063	<.001	<.001	3	11
ESCA	Mast cell migration →	+0.058	+0.182	<.001	<.001	3	10
STAD	Regulation of heart rate →	+0.027	+0.049	<.001	<.001	3	10

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,064 associations by consensus.

GTP metabolic process by LINC01998 expression — STAD

Explore this box plot interactively →