LINC01996

Across TCGA patient cohorts, LINC01996 RNA expression is significantly associated with the RNA expression of many other genes, with 10,544 significant associations in total. TGCT shows the largest number of these associations.

The most reproducible LINC01996-associated genes across cancer lineages are SMTNL2, RNU6-955P, and FTOP1. Each is linked with LINC01996 in more than 25 cancer types. Because this analysis shows association rather than direction, both LINC01996-to-partner and partner-to-LINC01996 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01996 versus SMTNL2 in MESO, with a Pearson correlation of 0.76.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01996→partner) and Y-score (partner→LINC01996) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
MESO	SMTNL2 →	+2.478	+1.182	<.001	<.001	3	26
STAD	RNU6-955P →	+0.708	+1.653	<.001	<.001	3	17
TGCT	FTOP1 →	+1.293	+0.658	<.001	<.001	3	16
TGCT	SLC5A9 →	+1.475	+0.670	<.001	<.001	3	15
MESO	IPO5P1 →	+1.001	+0.745	<.001	.003	2	15
ESCA	MYO15B →	+1.114	+0.579	<.001	<.001	3	14

Each partner links to its Q-omics profile. Showing the 6 strongest of 10,544 associations by consensus.

LINC01996 vs SMTNL2 — MESO

Explore this scatter interactively →