LINC01972

Across TCGA patient cohorts, LINC01972 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,106 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01972-associated GO terms across cancer lineages are Regulation of DNA repair, tRNA metabolic process, and Regulation of microtubule-based process. Each is linked with LINC01972 in more than 11 cancer types. Because this analysis shows association rather than direction, both LINC01972-to-partner and partner-to-LINC01972 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Regulation of DNA repair grouped by LINC01972-low versus LINC01972-high in ESCA.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01972→partner) and Y-score (partner→LINC01972) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
ESCA	Regulation of DNA repair →	+0.052	+0.138	.002	<.001	3	12
ESCA	tRNA metabolic process →	+0.054	+0.125	.001	<.001	3	12
STAD	Regulation of microtubule-based process →	+0.036	+0.139	<.001	<.001	3	12
STAD	Regulation of mitochondrial translation →	+0.043	+0.114	<.001	<.001	3	11
STAD	Regulation of spindle assembly →	+0.048	+0.121	<.001	<.001	3	11
ESCA	Mitochondrial gene expression →	+0.060	+0.143	<.001	<.001	3	11

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,106 associations by consensus.

Regulation of DNA repair by LINC01972 expression — ESCA

Explore this box plot interactively →