LINC01949

RNA expression — cross-omics
Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, LINC01949 RNA expression is significantly associated with the protein abundance of many other proteins, with 5,304 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LINC01949-associated proteins across cancer lineages are SKAP1, HLA-DPA1, and PPFIBP1_S999. Each is linked with LINC01949 in more than 2 cancer types. Because this analysis shows association rather than direction, both LINC01949-to-partner and partner-to-LINC01949 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01949 versus SKAP1 in CCRCC, with a Pearson correlation of 0.50.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01949→partner) and Y-score (partner→LINC01949) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
CCRCCSKAP1 →+0.557+0.051<.001<.00133
OVHLA-DPA1 →+0.623+0.026<.001.00133
OVPPFIBP1_S999 →-0.978-0.023.001.00732
CCRCCPTPN7 →+0.421+0.039<.001.00532
CCRCCPURB →-0.190-0.039<.001<.00132
CCRCCRAB32 →+0.287+0.056<.001<.00132
Each partner links to its Q-omics profile. Showing the 6 strongest of 5,304 associations by consensus.

LINC01949 vs SKAP1 — CCRCC

Per-sample scatter of LINC01949 vs SKAP1 in CCRCC (Pearson r = 0.50).

Explore this scatter interactively →

Exploration