Across TCGA pan-cancer cohorts, LINC01946 RNA differs between tumor and matched normal tissue in 3 of 18 cancer types tested, making tumor–normal expression one of LINC01946’s most consistent transcriptional readouts.

The strongest signal is observed in breast invasive carcinoma (BRCA), where LINC01946 RNA is more highly expressed in tumor relative to normal tissue. In most cancer types LINC01946 is over-expressed in tumor.

BRCA, KIRC, and LIHC are the cancer types where LINC01946 tumor–normal differential expression is most reproducible.

RNA tumor vs normal associations by lineage

Ranked by sampling consensus. Fold-change is the tumor-versus-normal difference in LINC01946 RNA (log₂); positive values indicate higher expression in tumor. p-values are from the differential-expression test.

Lineage	Gender	Stage	Fold-change	p	Sampling consensus
BRCA	Female	All	+0.129	.022	4	view →
KIRC	All	All	+0.026	.005	2	view →
LIHC	Male	All	+0.020	.040	1	view →

Pink = over-expressed in tumor, green = repressed in tumor. Showing the 3 strongest of 3 lineages.

Exploration

Same gene, other analysis: LINC01946 RNA expression & survival · all LINC01946 data types