LINC01879

Across TCGA patient cohorts, LINC01879 RNA expression is significantly associated with the protein abundance of many other proteins, with 6,042 significant associations in total. BRCA shows the largest number of these associations.

The most reproducible LINC01879-associated proteins across cancer lineages are USP28_S1053, MISP3_S18, and NAT10. Each is linked with LINC01879 in more than 2 cancer types. Because this analysis shows association rather than direction, both LINC01879-to-partner and partner-to-LINC01879 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01879 versus USP28_S1053 in OV, with a Pearson correlation of -0.22.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01879→partner) and Y-score (partner→LINC01879) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	USP28_S1053 →	-0.638	-0.039	.001	.003	3	2
LUAD	MISP3_S18 →	-0.701	-0.050	.001	.008	3	2
BRCA	NAT10 →	-0.371	-0.196	<.001	<.001	3	2
BRCA	NOC3L →	-0.396	-0.218	<.001	<.001	3	2
BRCA	SMC4 →	-0.483	-0.175	<.001	<.001	3	2
BRCA	SPATA20 →	+0.501	+0.150	<.001	<.001	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,042 associations by consensus.

LINC01879 vs USP28_S1053 — OV

Explore this scatter interactively →