LINC01879

Across TCGA patient cohorts, LINC01879 mutation is significantly associated with the RNA expression of many other genes, with 17 significant associations in total. BRCA shows the largest number of these associations.

The most reproducible LINC01879-associated genes across cancer lineages are RNF19BPY, RNU6-715P, and TSPY16P. Each is linked with LINC01879 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01879-to-partner and partner-to-LINC01879 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, RNF19BPY grouped by LINC01879-low versus LINC01879-high in BRCA.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01879→partner) and Y-score (partner→LINC01879) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	RNF19BPY →	+0.019	+9.057	<.001	.003	3	2
UCEC	RNU6-715P →	+0.548	+8.066	<.001	.007	3	1
UCEC	TSPY16P →	+0.159	+8.066	<.001	.007	3	1
UCEC	TSPY22P →	+0.129	+8.066	<.001	.007	3	1
UCEC	RN7SL647P →	+0.238	+8.066	<.001	.007	3	1
UCEC	RNU6-352P →	+0.529	+8.066	<.001	.007	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 17 associations by consensus.

RNF19BPY by LINC01879 expression — BRCA

Explore this box plot interactively →