LINC01840

Across TCGA patient cohorts, LINC01840 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,558 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01840-associated GO terms across cancer lineages are Negative regulation of mRNA metabolic process, Endosomal transport, and Nuclear export. Each is linked with LINC01840 in more than 13 cancer types. Because this analysis shows association rather than direction, both LINC01840-to-partner and partner-to-LINC01840 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Negative regulation of mRNA metabolic process grouped by LINC01840-low versus LINC01840-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01840→partner) and Y-score (partner→LINC01840) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Negative regulation of mRNA metabolic process →	+0.083	+0.296	<.001	<.001	3	14
STAD	Endosomal transport →	+0.075	+0.258	<.001	<.001	3	14
STAD	Nuclear export →	+0.084	+0.224	<.001	<.001	3	13
STAD	Maintenance of cell number →	+0.046	+0.173	<.001	<.001	3	13
STAD	Positive regulation of post-translational protein modification →	+0.049	+0.201	<.001	<.001	3	13
STAD	Transcription initiation at RNA polymerase I promoter →	+0.056	+0.305	<.001	<.001	3	13

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,558 associations by consensus.

Negative regulation of mRNA metabolic process by LINC01840 expression — STAD

Explore this box plot interactively →