LINC01804

Across TCGA patient cohorts, LINC01804 mutation is significantly associated with the RNA expression of many other genes, with 11 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC01804-associated genes across cancer lineages are MBD3L3, MIR4470, and S100A15A. Each is linked with LINC01804 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01804-to-partner and partner-to-LINC01804 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, MBD3L3 grouped by LINC01804-low versus LINC01804-high in COAD.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01804→partner) and Y-score (partner→LINC01804) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
COAD	MBD3L3 →	+0.129	+7.741	<.001	.009	3	1
UCEC	MIR4470 →	+0.768	+5.186	<.001	.007	3	1
UCEC	S100A15A →	+0.600	+5.031	.002	.009	3	1
UCEC	MTCO3P4 →	+0.139	+5.133	<.001	.008	3	1
UCEC	PPP1R26P5 →	+0.015	+5.937	.004	.002	3	1
UCEC	RN7SKP288 →	+0.453	+6.226	<.001	.001	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 11 associations by consensus.

MBD3L3 by LINC01804 expression — COAD

Explore this box plot interactively →