LINC01728

Across TCGA patient cohorts, LINC01728 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,452 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01728-associated GO terms across cancer lineages are IRES-dependent viral translational initiation, Regulation of lymphocyte differentiation, and Programmed cell death in response to reactive oxygen species. Each is linked with LINC01728 in more than 7 cancer types. Because this analysis shows association rather than direction, both LINC01728-to-partner and partner-to-LINC01728 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, IRES-dependent viral translational initiation grouped by LINC01728-low versus LINC01728-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01728→partner) and Y-score (partner→LINC01728) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	IRES-dependent viral translational initiation →	+0.097	+0.190	<.001	<.001	3	8
STAD	Regulation of lymphocyte differentiation →	+0.078	+0.185	<.001	<.001	3	8
STAD	Programmed cell death in response to reactive oxygen species →	+0.079	+0.193	<.001	<.001	3	7
LAML	Obsolete regulation of histone deacetylation →	+0.045	+0.078	.003	.003	3	7
STAD	Cellular response to glucose starvation →	+0.089	+0.179	<.001	<.001	3	7
STAD	Regulation of cell junction assembly →	+0.062	+0.178	<.001	<.001	3	7

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,452 associations by consensus.

IRES-dependent viral translational initiation by LINC01728 expression — STAD

Explore this box plot interactively →