LINC01704

Across TCGA patient cohorts, LINC01704 RNA expression is significantly associated with the protein abundance of many other proteins, with 7,219 significant associations in total. CCRCC shows the largest number of these associations.

The most reproducible LINC01704-associated proteins across cancer lineages are SHANK3_S795, TMOD2, and CS. Each is linked with LINC01704 in more than 2 cancer types. Because this analysis shows association rather than direction, both LINC01704-to-partner and partner-to-LINC01704 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01704 versus SHANK3_S795 in PDAC, with a Pearson correlation of 0.44.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01704→partner) and Y-score (partner→LINC01704) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
PDAC	SHANK3_S795 →	+0.675	+0.108	.001	.008	3	3
LSCC	TMOD2 →	+0.368	+0.182	<.001	<.001	3	3
PDAC	CS →	-0.288	-0.116	<.001	<.001	3	3
PDAC	KIAA0319L →	-0.293	-0.076	<.001	.003	3	3
CCRCC	KRBA1_S253 →	+0.707	+0.373	<.001	<.001	3	3
LSCC	RBM47 →	-0.217	-0.100	<.001	.001	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,219 associations by consensus.

LINC01704 vs SHANK3_S795 — PDAC

Explore this scatter interactively →