LINC01641

Across TCGA patient cohorts, LINC01641 mutation is significantly associated with the RNA expression of many other genes, with 108 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC01641-associated genes across cancer lineages are TGIF1P1, MTND1P33, and GPHB5. Each is linked with LINC01641 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01641-to-partner and partner-to-LINC01641 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, TGIF1P1 grouped by LINC01641-low versus LINC01641-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01641→partner) and Y-score (partner→LINC01641) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	TGIF1P1 →	+0.125	+2.814	<.001	.003	3	2
SKCM	MTND1P33 →	+0.056	+5.624	<.001	.002	3	2
BLCA	GPHB5 →	+0.104	+5.411	<.001	.005	3	1
BLCA	OR13G1 →	+0.053	+5.899	<.001	.002	3	1
BLCA	RNU6-650P →	+0.274	+5.038	.006	.009	3	1
BLCA	FAM24A →	+0.100	+5.411	<.001	.005	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 108 associations by consensus.

TGIF1P1 by LINC01641 expression — UCEC

Explore this box plot interactively →