LINC01608

RNA expression — cross-omics
Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, LINC01608 RNA expression is significantly associated with the protein abundance of many other proteins, with 9,332 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LINC01608-associated proteins across cancer lineages are WFS1, COMMD10_S155, and HADH_S13. Each is linked with LINC01608 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01608-to-partner and partner-to-LINC01608 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01608 versus WFS1 in GBM, with a Pearson correlation of 0.34.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01608→partner) and Y-score (partner→LINC01608) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMWFS1 →+0.395+0.395.001.00432
PDACCOMMD10_S155 →+0.480+0.015.006.00132
GBMHADH_S13 →-0.890-0.828.001<.00132
GBMAP2M1 →+0.366+0.423<.001<.00132
GBMCMSS1 →-0.296-0.363<.001<.00132
GBMAKAP13_S983 →-0.493-0.475<.001<.00132
Each partner links to its Q-omics profile. Showing the 6 strongest of 9,332 associations by consensus.

LINC01608 vs WFS1 — GBM

Per-sample scatter of LINC01608 vs WFS1 in GBM (Pearson r = 0.34).

Explore this scatter interactively →

Exploration