LINC01600

Across TCGA patient cohorts, LINC01600 mutation is significantly associated with the RNA expression of many other genes, with 1,704 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC01600-associated genes across cancer lineages are RN7SKP263, IGHD3-9, and IGHD2-2. Each is linked with LINC01600 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01600-to-partner and partner-to-LINC01600 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, RN7SKP263 grouped by LINC01600-low versus LINC01600-high in CESC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01600→partner) and Y-score (partner→LINC01600) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
CESC	RN7SKP263 →	+0.084	+4.984	<.001	.003	3	2
UCEC	IGHD3-9 →	+1.152	+1.824	.002	.006	3	2
UCEC	IGHD2-2 →	+1.288	+1.939	<.001	.002	3	2
UCEC	RNA5SP146 →	+0.431	+2.940	<.001	<.001	3	2
UCEC	PIGUP1 →	+0.201	+1.974	.001	.005	3	2
UCEC	TPRKBP1 →	+0.139	+1.806	.004	.005	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 1,704 associations by consensus.

RN7SKP263 by LINC01600 expression — CESC

Explore this box plot interactively →