LINC01588

mutation — cross-omics
Cross-omicsMUTATION → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, LINC01588 mutation is significantly associated with the RNA expression of many other genes, with 176 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC01588-associated genes across cancer lineages are LINC02563, RNA5SP421, and RNA5SP415. Each is linked with LINC01588 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01588-to-partner and partner-to-LINC01588 results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01588→partner) and Y-score (partner→LINC01588) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECLINC02563 →+0.175+3.198<.001.00732
UCECRNA5SP421 →+1.351+2.603<.001.00732
UCECRNA5SP415 →+1.039+2.903<.001.00532
SCLCPRM2 →+0.154+5.189<.001.00631
SCLCSMR3B →+0.138+5.189<.001.00631
UCECRNA5SP414 →+1.205+3.840<.001<.00131
Each partner links to its Q-omics profile. Showing the 6 strongest of 176 associations by consensus.

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