LINC01566

Across TCGA patient cohorts, LINC01566 mutation is significantly associated with the RNA expression of many other genes, with 4 significant associations in total. SKCM shows the largest number of these associations.

The most reproducible LINC01566-associated genes across cancer lineages are RNU6-1233P, FAM197Y5, and MTATP6P29. Each is linked with LINC01566 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01566-to-partner and partner-to-LINC01566 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, RNU6-1233P grouped by LINC01566-low versus LINC01566-high in SKCM.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01566→partner) and Y-score (partner→LINC01566) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SKCM	RNU6-1233P →	+0.653	+7.816	<.001	.008	3	1
SKCM	FAM197Y5 →	+0.029	+7.816	<.001	.008	3	1
SKCM	MTATP6P29 →	+0.223	+7.816	<.001	.008	3	1
UCEC	RNU6-591P →	+0.652	+8.066	<.001	.007	3	1

Each partner links to its Q-omics profile. Showing the 4 strongest of 4 associations by consensus.

RNU6-1233P by LINC01566 expression — SKCM

Explore this box plot interactively →