LINC01553

Across TCGA patient cohorts, LINC01553 mutation is significantly associated with the RNA expression of many other genes, with 228 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC01553-associated genes across cancer lineages are RNU1-62P, SETP4, and IGLVI-38. Each is linked with LINC01553 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01553-to-partner and partner-to-LINC01553 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, RNU1-62P grouped by LINC01553-low versus LINC01553-high in CESC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01553→partner) and Y-score (partner→LINC01553) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
CESC	RNU1-62P →	+0.228	+4.539	<.001	.008	3	2
UCEC	SETP4 →	+0.157	+3.193	<.001	<.001	3	2
UCEC	IGLVI-38 →	+0.099	+2.883	.008	.001	3	2
COAD	OR5D3P →	+0.046	+4.595	.004	.004	3	2
COAD	PIGPP3 →	+0.218	+3.602	<.001	.005	3	2
COAD	SLC20A1P3 →	+0.051	+4.595	.009	.004	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 228 associations by consensus.

RNU1-62P by LINC01553 expression — CESC

Explore this box plot interactively →