LINC01539

Across TCGA patient cohorts, LINC01539 RNA expression is significantly associated with the protein abundance of many other proteins, with 10,115 significant associations in total. HNSC shows the largest number of these associations.

The most reproducible LINC01539-associated proteins across cancer lineages are APEH, APRT, and RDX. Each is linked with LINC01539 in more than 2 cancer types. Because this analysis shows association rather than direction, both LINC01539-to-partner and partner-to-LINC01539 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01539 versus APEH in LSCC, with a Pearson correlation of -0.28.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01539→partner) and Y-score (partner→LINC01539) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	APEH →	-0.239	-0.409	<.001	<.001	3	3
HNSC	APRT →	-0.267	-0.661	.007	.001	3	3
LSCC	RDX →	-0.275	-0.501	<.001	.001	3	3
LUAD	IGF1R →	+0.374	+0.086	.002	.003	3	3
HNSC	UGP2 →	-0.361	-0.728	<.001	<.001	3	3
HNSC	ZKSCAN1 →	+0.289	+0.504	<.001	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 10,115 associations by consensus.

LINC01539 vs APEH — LSCC

Explore this scatter interactively →