LINC01478

Across TCGA patient cohorts, LINC01478 RNA expression is significantly associated with the protein abundance of many other proteins, with 5,866 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible LINC01478-associated proteins across cancer lineages are PACSIN1, STK4, and DEF6. Each is linked with LINC01478 in more than 3 cancer types. Because this analysis shows association rather than direction, both LINC01478-to-partner and partner-to-LINC01478 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01478 versus PACSIN1 in HNSC, with a Pearson correlation of 0.28.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01478→partner) and Y-score (partner→LINC01478) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
HNSC	PACSIN1 →	+0.627	+0.345	<.001	.007	3	4
LUAD	STK4 →	+0.272	+0.092	<.001	.001	3	4
LSCC	DEF6 →	+0.359	+0.155	<.001	<.001	3	4
LSCC	DOCK2 →	+0.435	+0.100	<.001	<.001	3	4
LSCC	GRAP2 →	+0.464	+0.098	<.001	<.001	3	4
LSCC	ANKRD44 →	+0.339	+0.087	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 5,866 associations by consensus.

LINC01478 vs PACSIN1 — HNSC

Explore this scatter interactively →