LINC01399

Across TCGA patient cohorts, LINC01399 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,592 significant associations in total. THYM shows the largest number of these associations.

The most reproducible LINC01399-associated GO terms across cancer lineages are Methylation, Nuclear pore complex assembly, and Meiotic chromosome condensation. Each is linked with LINC01399 in more than 18 cancer types. Because this analysis shows association rather than direction, both LINC01399-to-partner and partner-to-LINC01399 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Methylation grouped by LINC01399-low versus LINC01399-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01399→partner) and Y-score (partner→LINC01399) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Methylation →	+0.041	+0.165	<.001	.006	1	19
DLBC	Nuclear pore complex assembly →	+0.066	+0.693	<.001	.001	3	16
DLBC	Meiotic chromosome condensation →	+0.078	+0.654	.007	<.001	1	18
STAD	mRNA 3'-end processing →	+0.042	+0.155	<.001	.002	2	17
COAD	Macromolecule methylation →	+0.017	+0.131	<.001	<.001	2	16
STAD	tRNA metabolic process →	+0.047	+0.187	<.001	.002	2	16

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,592 associations by consensus.

Methylation by LINC01399 expression — STAD

Explore this box plot interactively →