LINC01299

Across TCGA patient cohorts, LINC01299 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,726 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01299-associated GO terms across cancer lineages are Positive regulation of DNA metabolic process, Protein polymerization, and Vesicle localization. Each is linked with LINC01299 in more than 14 cancer types. Because this analysis shows association rather than direction, both LINC01299-to-partner and partner-to-LINC01299 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Positive regulation of DNA metabolic process grouped by LINC01299-low versus LINC01299-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01299→partner) and Y-score (partner→LINC01299) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Positive regulation of DNA metabolic process →	+0.066	+0.080	<.001	<.001	3	14
STAD	Protein polymerization →	+0.060	+0.071	<.001	<.001	3	13
STAD	Vesicle localization →	+0.058	+0.074	<.001	<.001	3	13
STAD	rRNA metabolic process →	+0.075	+0.078	<.001	<.001	3	13
ESCA	DNA-templated transcription elongation →	+0.087	+0.128	<.001	.005	1	15
STAD	Protein neddylation →	+0.069	+0.076	<.001	<.001	3	13

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,726 associations by consensus.

Positive regulation of DNA metabolic process by LINC01299 expression — STAD

Explore this box plot interactively →