LINC01249

Across TCGA patient cohorts, LINC01249 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,455 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01249-associated GO terms across cancer lineages are RNA modification, Protein-DNA complex assembly, and Regulation of DNA repair. Each is linked with LINC01249 in more than 14 cancer types. Because this analysis shows association rather than direction, both LINC01249-to-partner and partner-to-LINC01249 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, RNA modification grouped by LINC01249-low versus LINC01249-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01249→partner) and Y-score (partner→LINC01249) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	RNA modification →	+0.073	+0.167	<.001	<.001	3	15
STAD	Protein-DNA complex assembly →	+0.055	+0.121	<.001	<.001	3	14
STAD	Regulation of DNA repair →	+0.095	+0.223	<.001	<.001	3	14
STAD	tRNA metabolic process →	+0.098	+0.219	<.001	.001	3	14
STAD	Cell cycle G2/M phase transition →	+0.101	+0.232	<.001	<.001	3	13
STAD	Attachment of mitotic spindle microtubules to kinetochore →	+0.110	+0.210	<.001	<.001	3	13

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,455 associations by consensus.

RNA modification by LINC01249 expression — STAD

Explore this box plot interactively →