LINC01243

Across TCGA patient cohorts, LINC01243 RNA expression is significantly associated with the go_rna of many other GO terms, with 5,563 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC01243-associated GO terms across cancer lineages are RNA methylation, mRNA 3'-end processing, and Mitochondrial gene expression. Each is linked with LINC01243 in more than 6 cancer types. Because this analysis shows association rather than direction, both LINC01243-to-partner and partner-to-LINC01243 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, RNA methylation grouped by LINC01243-low versus LINC01243-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01243→partner) and Y-score (partner→LINC01243) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	RNA methylation →	+0.124	+0.075	<.001	.001	3	7
STAD	mRNA 3'-end processing →	+0.134	+0.073	<.001	.003	3	7
STAD	Mitochondrial gene expression →	+0.154	+0.054	<.001	.001	3	7
ESCA	Protein K63-linked deubiquitination →	+0.110	+0.041	<.001	.001	3	7
STAD	Regulation of double-strand break repair via homologous recombination →	+0.127	+0.053	<.001	.001	3	6
STAD	Organophosphate ester transport →	+0.091	+0.121	<.001	<.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest of 5,563 associations by consensus.

RNA methylation by LINC01243 expression — STAD

Explore this box plot interactively →