LINC01242

Across TCGA patient cohorts, LINC01242 RNA expression is significantly associated with the RNA expression of many other genes, with 3,508 significant associations in total. TGCT shows the largest number of these associations.

The most reproducible LINC01242-associated genes across cancer lineages are PPP4R3C, LINC02327, and LINC02476. Each is linked with LINC01242 in more than 15 cancer types. Because this analysis shows association rather than direction, both LINC01242-to-partner and partner-to-LINC01242 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC01242 versus PPP4R3C in LIHC, with a Pearson correlation of 0.48.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01242→partner) and Y-score (partner→LINC01242) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LIHC	PPP4R3C →	+1.860	+0.200	<.001	<.001	3	16
SKCM	LINC02327 →	+0.801	+0.035	<.001	<.001	3	15
LIHC	LINC02476 →	+1.382	+0.171	<.001	<.001	3	15
LIHC	LINC02241 →	+1.098	+0.158	<.001	<.001	3	14
LIHC	COX7B2 →	+3.431	+0.184	<.001	<.001	3	14
KICH	MS4A13 →	+1.039	+0.071	<.001	.001	3	14

Each partner links to its Q-omics profile. Showing the 6 strongest of 3,508 associations by consensus.

LINC01242 vs PPP4R3C — LIHC

Explore this scatter interactively →